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ERX12722153: Raw reads: Gridion sequencing of Vibrio cholerae isolate CTMA_1832
1 OXFORD_NANOPORE (GridION) run: 197,733 spots, 769.1M bases, 681Mb downloads

Design: unspecified
Submitted by: Institut de recherche experimentale et clinique - IREC (Institut de recherche experimentale et clinique - )
Study: Genomic insights into Vibrio cholerae isolates associated with cholera outbreaks in the Democratic Republic of Congo between 2018 and 2022
show Abstracthide Abstract
For the past three decades, the Democratic Republic of Congo (DRC) has been severely affected by recurrent cholera outbreaks. Genomic studies have shown that all the isolates of V. cholerae causing cholera belonged to the 10th transmission event within the third wave of V. cholerae O1 El Tor of the 7th cholera pandemic (7PET). In this study, 174 clinical V. cholerae isolated between 2018 and 2022 from the Great Lakes Region (GLR) provinces of North-Kivu, South-Kivu, and Tanganyika, as well as from the Kasai Oriental province in the center of the country, were whole-genome sequenced and their genomes analyzed for phylogenomic changes compared to V. cholerae isolates from past years in the same country
Sample: Clinical isolate CTMA_1832
SAMEA114395409 • ERS16384472 • All experiments • All runs
Organism: Vibrio cholerae
Library:
Instrument: GridION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 197,733 spots, 769.1M bases, 681Mb
Run# of Spots# of BasesSizePublished
ERR13351229197,733769.1M681Mb2024-07-30

ID:
34494344

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